1. Nelson DL, Cox MM. Principles of biochemistry. New York: W.H. Freeman; 2012. pp. 84-252. [
Link]
2. Schäfer M, Schneider TR, Sheldrick GM. Crystal structure of vancomycin. Structure. 1996;4(12):1509-1515. [
Link] [
DOI:10.1016/S0969-2126(96)00156-6]
3. Leclercq R, Derlot E, Weber M, Duval J, Courvalin P. Transferable vancomycin and teicoplanin resistance in Enterococcus faecium. Antimicrobial Agents and Chemotherapy. 1989;33(1):10-15. [
Link] [
DOI:10.1128/AAC.33.1.10]
4. Neu HC. The crisis in antibiotic resistance. Science. 1992;257(5073):1064-1073. [
Link] [
DOI:10.1126/science.257.5073.1064]
5. Bai X, Lu B, Chen X, Zhang B, Tang J. Reversible detection of vancomycin using peptide-functionalized cantilever array sensor. Biosensors and Bioelectronics. 2014;62:145-150. [
Link] [
DOI:10.1016/j.bios.2014.06.024]
6. Lang HP, Hegner M, Gerber C. Cantilever array sensors. Materials Today. 2005;8(4):30-36. [
Link] [
DOI:10.1016/S1369-7021(05)00792-3]
7. Shnayerson M, Plotkin M. The killers within: The deadly rise of drug-resistant bacteria. New York: B Demco Media; 2003. [
Link]
8. Liu C, Bayer A, Cosgrove SE, Daum RS, Fridkin SK, Gorwitz RJ, et al. Clinical practice guidelines by the infectious diseases society of America for the treatment of methicillin-resistant Staphylococcus aureus infections in adults and children: Executive summary. Clinical Infectious Diseases. 2011;52(3):285-292. [
Link] [
DOI:10.1093/cid/cir034]
9. Watanakunakorn C. Mode of action and in-vitro activity of vancomycin. Journal of Antimicrobial Chemotherapy. 1984;14(Suppl D):7-18. [
Link] [
DOI:10.1093/jac/14.suppl_D.7]
10. Hoshyarmanesh S, Bahrami M, Kalantarinejad R. A multiscale approach in the computational modeling of bio-physical environment of micro-mechanical biosensor towards the prostate specific antigen diagnosis. Journal of Computational and Theoretical Nanoscience. 2014;11(5):1374-1384. [
Link] [
DOI:10.1166/jctn.2014.3507]
11. Alder BJ, Wainwright TE. Studies in molecular dynamics. I. general method. The Journal of Chemical Physics. 1959;31(2):459. [
Link] [
DOI:10.1063/1.1730376]
12. Small PM, Chambers HF. Vancomycin for Staphylococcus aureus endocarditis in intravenous drug users. Antimicrobial Agents and Chemotherapy. 1990;34(6):1227-1231. [
Link] [
DOI:10.1128/AAC.34.6.1227]
13. Dutta S, Dimitropoulos D, Feng Z, Persikova I, Sen S, Shao C, et al. Improving the representation of peptide-like inhibitor and antibiotic molecules in the protein data bank. Biopolymers. 2014;101(6):659-668. [
Link] [
DOI:10.1002/bip.22434]
14. Nitanai Y, Kikuchi T, Kakoi K, Hanamaki Sh, Fujisawa I, Aoki K. Crystal structures of the complexes between vancomycin and cell-wall precursor analogs. Journal of Molecular Biology. 2009;385(5):1422-1432. [
Link] [
DOI:10.1016/j.jmb.2008.10.026]
15. Loll PJ, Bevivino AE, Korty BD, Axelsen PH. Simultaneous recognition of a carboxylate-containing ligand and an intramolecular surrogate ligand in the crystal structure of an asymmetric vancomycin dimer. Journal of the American Chemical Society. 1997;119(7):1516-1522. [
Link] [
DOI:10.1021/ja963566p]
16. Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, et al. The protein data bank. Nucleic Acids Research. 2000;28(1):235-242. [
Link] [
DOI:10.1093/nar/28.1.235]
17. Pedretti A, Villa L, Vistoli G. Atom-type description language: A universal language to recognize atom types implemented in the VEGA program. Theoretical Chemistry Accounts. 2003;109(4):229-232. [
Link] [
DOI:10.1007/s00214-002-0402-6]
18. Phillips JC, Braun R, Wang W, Gumbart J, Tajkhorshid E, Villa E, et al. Scalable molecular dynamics with NAMD. Journal of Computational Chemistry. 2005;26(16):1781-1802. [
Link] [
DOI:10.1002/jcc.20289]
19. Arlett JL, Myers EB, Roukes ML. Comparative advantages of mechanical biosensors. Nature Nanotechnology. 2011;6(4):203-215. [
Link] [
DOI:10.1038/nnano.2011.44]
20. Khaled ARA, Vafai K, Yang M, Zhang X, Ozkan CS. Analysis, control and augmentation of microcantilever deflections in bio-sensing systems. Sensors and Actuators B Chemical. 2003;94(1):103-115. [
Link] [
DOI:10.1016/S0925-4005(03)00231-4]
21. Mohammadi P, Liu LP, Sharma P, Kukta RV. Surface energy, elasticity and the homogenization of rough surfaces. Journal of the Mechanics and Physics of Solids. 2013;61(2):325-340. [
Link] [
DOI:10.1016/j.jmps.2012.10.010]
22. Matsunaga M, Nakanishi T, Asahi T, Osaka T. Effect of surface coverage of gold (111) electrode with cysteine on the chiral discrimination of DOPA. Chirality. 2007;19(4):295-299. [
Link] [
DOI:10.1002/chir.20376]
23. Vanommeslaeghe K, Hatcher E, Acharya C, Kundu S, Zhong S, Shim J, et al. CHARMM General Force Field (CGenFF): A force field for drug-like molecules compatible with the CHARMM all-atom additive biological force fields. Journal of Computational Chemistry. 2010;31(4):671-690. [
Link] [
DOI:10.1002/jcc.21367]
24. Gfeller D, Michielin O, Zoete V. SwissSidechain: A molecular and structural database of non-natural sidechains. Nucleic Acids Research. 2013;41(D1):D327-D332. [
Link] [
DOI:10.1093/nar/gks991]