Vibration control of large flexible structures in new dynamic systems has significantly encountered with many challenges. In this area, there are several approaches of vibration control implemented on complicated dynamic systems in which the change of vibrational characteristics with the time of process leads to performance violation. In this paper, regarding the estimation of undesired vibration frequency of a flexible structure, input control of the dynamic system is reconstructed. In this regards, the input of the dynamic system is made to minimize the magnitude of the vibration. This strategy in which the control input is constructed by means of undesired vibration frequencies is similar to use of anti-viruses in medicinal approaches. The proposed control strategy is implemented on yaw channel of a flexible sounding rocket in order to reduce the destructive effects of bending vibration. The system responses show the effects of the vibration on the yaw channel of the system are significantly decreased.